Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2061257..2061528 | Replicon | chromosome |
| Accession | NZ_CP080056 | ||
| Organism | Escherichia coli strain 18SZHZ655Rt | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2061387..2061490 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2061257..2061528 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZO13_RS09820 | 2057812..2058474 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KZO13_RS09825 | 2058498..2059154 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KZO13_RS09830 | 2059256..2059486 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KZO13_RS09835 | 2059625..2059999 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| KZO13_RS09840 | 2060003..2060875 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| KZO13_RS09845 | 2060888..2061229 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2061257..2061528 | - | 272 | - | - | Antitoxin |
| - | 2061387..2061490 | + | 104 | - | - | Toxin |
| KZO13_RS09850 | 2061625..2062281 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| KZO13_RS09855 | 2062282..2062473 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KZO13_RS09860 | 2062578..2062814 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KZO13_RS09865 | 2062932..2064371 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T210572 NZ_CP080056:2061387-2061490 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT210572 NZ_CP080056:c2061528-2061257 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
