Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2777694..2777965 | Replicon | chromosome |
| Accession | NZ_CP079992 | ||
| Organism | Escherichia coli strain KMS2001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2777732..2777835 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2777694..2777965 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KYK85_RS13530 | 2774851..2776290 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KYK85_RS13535 | 2776408..2776644 | + | 237 | WP_001295499.1 | YebV family protein | - |
| KYK85_RS13540 | 2776749..2776940 | + | 192 | WP_000457842.1 | YebW family protein | - |
| KYK85_RS13545 | 2776941..2777597 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2777694..2777965 | + | 272 | - | - | Antitoxin |
| - | 2777732..2777835 | - | 104 | - | - | Toxin |
| KYK85_RS13550 | 2777993..2778334 | - | 342 | WP_000976476.1 | YebY family protein | - |
| KYK85_RS13555 | 2778347..2779219 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| KYK85_RS13560 | 2779223..2779597 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KYK85_RS13565 | 2779736..2779966 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KYK85_RS13570 | 2780068..2780724 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KYK85_RS13575 | 2780748..2781410 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T210496 NZ_CP079992:c2777835-2777732 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT210496 NZ_CP079992:2777694-2777965 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
