Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2777693..2777964 | Replicon | chromosome |
| Accession | NZ_CP079991 | ||
| Organism | Escherichia coli strain KMS2005 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2777731..2777834 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2777693..2777964 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KYK86_RS13545 | 2774850..2776289 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KYK86_RS13550 | 2776407..2776643 | + | 237 | WP_001295499.1 | YebV family protein | - |
| KYK86_RS13555 | 2776748..2776939 | + | 192 | WP_000457842.1 | YebW family protein | - |
| KYK86_RS13560 | 2776940..2777596 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2777693..2777964 | + | 272 | - | - | Antitoxin |
| - | 2777731..2777834 | - | 104 | - | - | Toxin |
| KYK86_RS13565 | 2777992..2778333 | - | 342 | WP_000976476.1 | YebY family protein | - |
| KYK86_RS13570 | 2778346..2779218 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| KYK86_RS13575 | 2779222..2779596 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KYK86_RS13580 | 2779735..2779965 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KYK86_RS13585 | 2780067..2780723 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KYK86_RS13590 | 2780747..2781409 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T210464 NZ_CP079991:c2777834-2777731 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT210464 NZ_CP079991:2777693-2777964 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
