Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 223412..223679 | Replicon | chromosome |
| Accession | NZ_CP079891 | ||
| Organism | Escherichia fergusonii strain 5zf15-2-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 223538..223641 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 223412..223679 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KYD87_RS01065 | 219962..220624 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| KYD87_RS01070 | 220648..221304 | - | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| KYD87_RS01075 | 221411..221641 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| KYD87_RS01080 | 221780..222154 | + | 375 | WP_181669742.1 | CopC domain-containing protein YobA | - |
| KYD87_RS01085 | 222157..223029 | + | 873 | WP_181669743.1 | copper homeostasis membrane protein CopD | - |
| KYD87_RS01090 | 223041..223382 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 223412..223679 | - | 268 | - | - | Antitoxin |
| - | 223538..223641 | + | 104 | - | - | Toxin |
| KYD87_RS01095 | 223775..224431 | + | 657 | WP_181669744.1 | protein-serine/threonine phosphatase | - |
| KYD87_RS01100 | 224432..224623 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KYD87_RS01105 | 224728..224964 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KYD87_RS01110 | 225082..226521 | - | 1440 | WP_181669745.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T210316 NZ_CP079891:223538-223641 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 268 bp
>AT210316 NZ_CP079891:c223679-223412 [Escherichia fergusonii]
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
