Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1957801..1958068 | Replicon | chromosome |
| Accession | NZ_CP079884 | ||
| Organism | Escherichia fergusonii strain 6S41-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1957927..1958030 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1957801..1958068 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KYC43_RS09395 | 1954351..1955013 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| KYC43_RS09400 | 1955037..1955693 | - | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| KYC43_RS09405 | 1955800..1956030 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| KYC43_RS09410 | 1956169..1956543 | + | 375 | WP_181669742.1 | CopC domain-containing protein YobA | - |
| KYC43_RS09415 | 1956546..1957418 | + | 873 | WP_181669743.1 | copper homeostasis membrane protein CopD | - |
| KYC43_RS09420 | 1957430..1957771 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 1957801..1958068 | - | 268 | - | - | Antitoxin |
| - | 1957927..1958030 | + | 104 | - | - | Toxin |
| KYC43_RS09425 | 1958164..1958820 | + | 657 | WP_181669744.1 | protein-serine/threonine phosphatase | - |
| KYC43_RS09430 | 1958821..1959012 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KYC43_RS09435 | 1959117..1959353 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KYC43_RS09440 | 1959471..1960910 | - | 1440 | WP_181669745.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T210284 NZ_CP079884:1957927-1958030 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 268 bp
>AT210284 NZ_CP079884:c1958068-1957801 [Escherichia fergusonii]
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
