Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 1224865..1225424 Replicon chromosome
Accession NZ_CP079860
Organism Vibrio neptunius strain KCTC 12702

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag KW548_RS22325 Protein ID WP_219348750.1
Coordinates 1225110..1225424 (+) Length 105 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag KW548_RS22320 Protein ID WP_045974123.1
Coordinates 1224865..1225122 (+) Length 86 a.a.

Genomic Context


KW548_RS22295KW548_RS22300KW548_RS22305KW548_RS22310KW548_RS22315KW548_RS22320KW548_RS22325KW548_RS22330KW548_RS22335KW548_RS22340KW548_RS25515KW548_RS22350KW548_RS22355KW548_RS22275KW548_RS22280KW548_RS22285KW548_RS22290KW548_RS22345
Location: 1221786..1222049 (264 bp)
Type: Others
Protein ID: WP_219348745.1
Location: 1222092..1222775 (684 bp)
Type: Others
Protein ID: WP_219348746.1
Location: 1222841..1223254 (414 bp)
Type: Others
Protein ID: WP_219348747.1
Location: 1223393..1223950 (558 bp)
Type: Others
Protein ID: WP_219348748.1
Location: 1223989..1224627 (639 bp)
Type: Others
Protein ID: WP_219348749.1
Location: 1224865..1225122 (258 bp)
Type: Antitoxin
Protein ID: WP_045974123.1
Location: 1225110..1225424 (315 bp)
Type: Toxin
Protein ID: WP_219348750.1
Location: 1225646..1226128 (483 bp)
Type: Others
Protein ID: WP_257713424.1
Location: 1226359..1226883 (525 bp)
Type: Others
Protein ID: WP_206373393.1
Location: 1227135..1227359 (225 bp)
Type: Others
Protein ID: WP_219349262.1
Location: 1228001..1228135 (135 bp)
Type: Others
Protein ID: WP_257713425.1
Location: 1228156..1228563 (408 bp)
Type: Others
Protein ID: WP_206373392.1
Location: 1228563..1229624 (1062 bp)
Type: Others
Protein ID: WP_219348752.1
Location: 1220359..1220640 (282 bp)
Type: Others
Protein ID: WP_257713423.1
Location: 1220983..1221273 (291 bp)
Type: Others
Protein ID: WP_206372260.1
Location: 1221263..1221511 (249 bp)
Type: Others
Protein ID: WP_206372259.1
Location: 1221594..1221741 (148 bp)
Type: Others
Protein ID: Protein_1159
Location: 1227406..1227703 (298 bp)
Type: Others
Protein ID: Protein_1170
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
KW548_RS22275 (KW548_22280)1220359..1220640-282WP_257713423.1hypothetical protein-
KW548_RS22280 (KW548_22285)1220983..1221273-291WP_206372260.1type II toxin-antitoxin system RelE/ParE family toxin-
KW548_RS22285 (KW548_22290)1221263..1221511-249WP_206372259.1type II toxin-antitoxin system Phd/YefM family antitoxin-
KW548_RS22290 (KW548_22295)1221594..1221741-148Protein_1159IS110 family transposase-
KW548_RS22295 (KW548_22300)1221786..1222049+264WP_219348745.1hypothetical protein-
KW548_RS22300 (KW548_22305)1222092..1222775+684WP_219348746.1SDR family oxidoreductase-
KW548_RS22305 (KW548_22310)1222841..1223254+414WP_219348747.1GFA family protein-
KW548_RS22310 (KW548_22315)1223393..1223950+558WP_219348748.1nucleotidyltransferase family protein-
KW548_RS22315 (KW548_22320)1223989..1224627+639WP_219348749.1HAD hydrolase-like protein-
KW548_RS22320 (KW548_22325)1224865..1225122+258WP_045974123.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
KW548_RS22325 (KW548_22330)1225110..1225424+315WP_219348750.1type II toxin-antitoxin system RelE/ParE family toxinToxin
KW548_RS22330 (KW548_22335)1225646..1226128+483WP_257713424.1hypothetical protein-
KW548_RS22335 (KW548_22340)1226359..1226883+525WP_206373393.1DinB family protein-
KW548_RS22340 (KW548_22345)1227135..1227359+225WP_219349262.1hypothetical protein-
KW548_RS22345 (KW548_22350)1227406..1227703-298Protein_1170transposase-
KW548_RS255151228001..1228135+135WP_257713425.1hypothetical protein-
KW548_RS22350 (KW548_22355)1228156..1228563+408WP_206373392.1hypothetical protein-
KW548_RS22355 (KW548_22360)1228563..1229624+1062WP_219348752.1ABC transporter transmembrane domain-containing protein-

Associated MGEs


Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 105 a.a.        Molecular weight: 11957.97 Da        Isoelectric Point: 5.2080

>T210252 WP_219348750.1 NZ_CP079860:1225110-1225424 [Vibrio neptunius]
MAEIIWTEPALSDLNDIAEYIALENIVAAKELVQAIFSKVERLEAFPESGRIPPKLEHLSYREVVVNPCRIFYKQDGDKV
FILFVMRSERDLRKFLLSKLGMSG

Download         Length: 315 bp

>T210252 NZ_CP104479:c4231868-4231560 [Salmonella enterica]
ATGCAATACATGGTTTATCGCAATAAAGGAAACAGCAAGGCTTATCCTTATTTACTTGATGTGCAAAGCGATATTATTGA
TGAATTGCATACTCGCATGGTTATCCCATTGTTTCCTGTGAGCAGATTGGTAAATAACCCAGTTAAGCGCCTCACGCCCA
CTCTGAATGTGGAAGGTAATGACTATCTGGTGATGACTCACGAAATGGCGAGTATCAGGCTTTCGCAGATTGGTGATGAG
GTGATGGACGTTCGTTCCCACAGGCAAACCATCAAAAATGCTCTCGATTTTATCTTTGACGGGTTCTGA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9620.12 Da        Isoelectric Point: 6.7273

>AT210252 WP_045974123.1 NZ_CP079860:1224865-1225122 [Vibrio neptunius]
MKVELVTSLKRQATKILADLHETKEPVLITEHGKPSAYLVDVDDYEFMQNRLAILEGIARGERALADGKVVSHDEAKDKM
SKWLK

Download         Length: 258 bp

>AT210252 NZ_CP104479:c4232110-4231871 [Salmonella enterica]
ATGTCGGGTATGAGTGTACGACATAAAAAAACAGTCAGTGTCACGCTGGAACCTGCATTGCTTCAGCAAGCCCGTGATGC
AGGTATTAATCTGTCTGCGGTGCTTACCGCCGCGCTGAAAGAGGAAATCAGTGCCACAGGCGTTGAACGCTGGAAAGCAG
AAAATAGAGCGGGTTTGCAGGAGCTCAATCGTATTACTGATGAGCACGGCCTTTTATCGGACGATTACAGGACGTTTTAA

Similar Proteins


Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures


Toxin

Loading, please wait
Source
ID
Structure
No matching records found


Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References