Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4160256..4160399 | Replicon | chromosome |
| Accession | NZ_CP079839 | ||
| Organism | Salmonella enterica strain LHICA_E3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4160258..4160361 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4160256..4160399 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMJ87_RS20090 | 4155961..4156446 | + | 486 | WP_046093209.1 | hypothetical protein | - |
| JMJ87_RS24930 | 4157048..4157821 | + | 774 | WP_257589999.1 | hypothetical protein | - |
| JMJ87_RS24935 | 4158070..4159062 | + | 993 | WP_257589998.1 | DUF4116 domain-containing protein | - |
| JMJ87_RS20100 | 4159404..4159583 | + | 180 | WP_001168919.1 | hypothetical protein | - |
| JMJ87_RS20105 | 4159777..4160118 | + | 342 | Protein_3931 | tyrosine-type recombinase/integrase | - |
| - | 4160256..4160399 | + | 144 | - | - | Antitoxin |
| - | 4160258..4160361 | - | 104 | - | - | Toxin |
| JMJ87_RS20110 | 4160505..4160855 | - | 351 | WP_079974728.1 | YebY family protein | - |
| JMJ87_RS20115 | 4160873..4161748 | - | 876 | WP_000979698.1 | copper homeostasis membrane protein CopD | - |
| JMJ87_RS20120 | 4161749..4162123 | - | 375 | WP_001664129.1 | CopC domain-containing protein YobA | - |
| JMJ87_RS20125 | 4162261..4162491 | + | 231 | WP_000856223.1 | DNA polymerase III subunit theta | - |
| JMJ87_RS20130 | 4162599..4163255 | + | 657 | WP_000100253.1 | carbon-nitrogen hydrolase family protein | - |
| JMJ87_RS20135 | 4163279..4163977 | + | 699 | WP_000944281.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 4145026..4166064 | 21038 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T210233 NZ_CP079839:c4160361-4160258 [Salmonella enterica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT210233 NZ_CP079839:4160256-4160399 [Salmonella enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
