Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1940268..1940411 | Replicon | chromosome |
| Accession | NZ_CP079837 | ||
| Organism | Salmonella enterica subsp. salamae strain LHICA_SA2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1940306..1940409 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1940268..1940411 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMJ84_RS09165 | 1936690..1937388 | - | 699 | WP_023178689.1 | exodeoxyribonuclease X | - |
| JMJ84_RS09170 | 1937412..1938068 | - | 657 | WP_046093206.1 | carbon-nitrogen hydrolase family protein | - |
| JMJ84_RS09175 | 1938176..1938406 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| JMJ84_RS09180 | 1938544..1938918 | + | 375 | WP_079789386.1 | CopC domain-containing protein YobA | - |
| JMJ84_RS09185 | 1938919..1939794 | + | 876 | WP_079808988.1 | copper homeostasis membrane protein CopD | - |
| JMJ84_RS09190 | 1939812..1940162 | + | 351 | WP_000722373.1 | YebY family protein | - |
| - | 1940268..1940411 | - | 144 | - | - | Antitoxin |
| - | 1940306..1940409 | + | 104 | - | - | Toxin |
| JMJ84_RS09195 | 1940549..1941238 | - | 690 | Protein_1803 | tyrosine-type recombinase/integrase | - |
| JMJ84_RS09200 | 1941232..1941997 | + | 766 | Protein_1804 | IS256 family transposase | - |
| JMJ84_RS09205 | 1942153..1944249 | - | 2097 | WP_219142096.1 | DUF4116 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 1941479..1941997 | 518 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T210192 NZ_CP079837:1940306-1940409 [Salmonella enterica subsp. salamae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT210192 NZ_CP079837:c1940411-1940268 [Salmonella enterica subsp. salamae]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
