Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2045339..2045483 | Replicon | chromosome |
| Accession | NZ_CP079802 | ||
| Organism | Klebsiella variicola strain EMBL-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2045375..2045477 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2045339..2045483 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KU883_RS09870 (KU883_09865) | 2040469..2042529 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| KU883_RS09875 (KU883_09870) | 2042533..2043192 | - | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| KU883_RS09880 (KU883_09875) | 2043271..2043501 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| KU883_RS09885 (KU883_09880) | 2043615..2043989 | + | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| KU883_RS09890 (KU883_09885) | 2043993..2044862 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| KU883_RS09895 (KU883_09890) | 2044879..2045217 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 2045339..2045483 | - | 145 | - | - | Antitoxin |
| - | 2045375..2045477 | + | 103 | - | - | Toxin |
| KU883_RS09900 (KU883_09895) | 2045862..2046005 | - | 144 | WP_046621074.1 | Ecr family regulatory small membrane protein | - |
| KU883_RS09905 (KU883_09900) | 2046109..2047098 | - | 990 | WP_032691211.1 | VirK/YbjX family protein | - |
| KU883_RS09910 (KU883_09905) | 2047234..2047887 | + | 654 | WP_022066249.1 | protein-serine/threonine phosphatase | - |
| KU883_RS09915 (KU883_09910) | 2047884..2048075 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KU883_RS09920 (KU883_09915) | 2048173..2048412 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KU883_RS09925 (KU883_09920) | 2048528..2049961 | - | 1434 | WP_077139314.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T210120 NZ_CP079802:2045375-2045477 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT210120 NZ_CP079802:c2045483-2045339 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
