Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 996481..996752 | Replicon | chromosome |
| Accession | NZ_CP079780 | ||
| Organism | Escherichia coli strain BL12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 996519..996622 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 996481..996752 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KYX59_RS06960 | 993638..995077 | + | 1440 | WP_024238487.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KYX59_RS06965 | 995195..995431 | + | 237 | WP_001338166.1 | YebV family protein | - |
| KYX59_RS06970 | 995536..995727 | + | 192 | WP_001338167.1 | YebW family protein | - |
| KYX59_RS06975 | 995728..996384 | - | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| - | 996481..996752 | + | 272 | - | - | Antitoxin |
| - | 996519..996622 | - | 104 | - | - | Toxin |
| KYX59_RS06980 | 996780..997121 | - | 342 | WP_000976472.1 | YebY family protein | - |
| KYX59_RS06985 | 997134..998006 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| KYX59_RS06990 | 998010..998384 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KYX59_RS06995 | 998523..998753 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KYX59_RS07000 | 998855..999511 | + | 657 | WP_259482564.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KYX59_RS07005 | 999535..1000197 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T210062 NZ_CP079780:c996622-996519 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT210062 NZ_CP079780:996481-996752 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
