Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 859447..859718 | Replicon | chromosome |
| Accession | NZ_CP079772 | ||
| Organism | Escherichia coli strain GS04 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 859577..859680 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 859447..859718 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KYX57_RS04205 | 856002..856664 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KYX57_RS04210 | 856688..857344 | - | 657 | WP_259482564.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KYX57_RS04215 | 857446..857676 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KYX57_RS04220 | 857815..858189 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KYX57_RS04225 | 858193..859065 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| KYX57_RS04230 | 859078..859419 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 859447..859718 | - | 272 | - | - | Antitoxin |
| - | 859577..859680 | + | 104 | - | - | Toxin |
| KYX57_RS04235 | 859815..860471 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| KYX57_RS04240 | 860472..860663 | - | 192 | WP_001338167.1 | YebW family protein | - |
| KYX57_RS04245 | 860768..861004 | - | 237 | WP_001338166.1 | YebV family protein | - |
| KYX57_RS04250 | 861122..862561 | - | 1440 | WP_024238487.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T210016 NZ_CP079772:859577-859680 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT210016 NZ_CP079772:c859718-859447 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
