Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 805013..805284 | Replicon | chromosome |
| Accession | NZ_CP079767 | ||
| Organism | Escherichia coli strain SF10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 805143..805246 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 805013..805284 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KX927_RS06195 | 801568..802230 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KX927_RS06200 | 802254..802910 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KX927_RS06205 | 803012..803242 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KX927_RS06210 | 803381..803755 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KX927_RS06215 | 803759..804631 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| KX927_RS06220 | 804644..804985 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 805013..805284 | - | 272 | - | - | Antitoxin |
| - | 805143..805246 | + | 104 | - | - | Toxin |
| KX927_RS06225 | 805381..806037 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| KX927_RS06230 | 806038..806229 | - | 192 | WP_000457842.1 | YebW family protein | - |
| KX927_RS06235 | 806334..806570 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KX927_RS06240 | 806688..808127 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T209967 NZ_CP079767:805143-805246 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT209967 NZ_CP079767:c805284-805013 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
