Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1636606..1636751 | Replicon | chromosome |
| Accession | NZ_CP079762 | ||
| Organism | Klebsiella pneumoniae strain JP20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1636613..1636715 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1636606..1636751 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KYE76_RS07965 | 1632360..1632599 | + | 240 | WP_002911393.1 | YebV family protein | - |
| KYE76_RS07970 | 1632697..1632888 | + | 192 | WP_002911395.1 | YebW family protein | - |
| KYE76_RS07975 | 1632885..1633529 | - | 645 | WP_116440814.1 | protein-serine/threonine phosphatase | - |
| KYE76_RS07980 | 1633686..1634642 | + | 957 | WP_162866168.1 | VirK/YbjX family protein | - |
| KYE76_RS07985 | 1634652..1635857 | - | 1206 | Protein_1588 | IS4-like element ISVsa5 family transposase | - |
| KYE76_RS07990 | 1636094..1636237 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1636606..1636751 | + | 146 | - | - | Antitoxin |
| - | 1636613..1636715 | - | 103 | - | - | Toxin |
| KYE76_RS07995 | 1636874..1637212 | - | 339 | WP_002911404.1 | YebY family protein | - |
| KYE76_RS08000 | 1637229..1638098 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| KYE76_RS08005 | 1638102..1638476 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KYE76_RS08010 | 1638589..1638819 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KYE76_RS08015 | 1638898..1639557 | + | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| KYE76_RS08020 | 1639561..1641621 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T209946 NZ_CP079762:c1636715-1636613 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT209946 NZ_CP079762:1636606-1636751 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
