Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1903388..1903659 | Replicon | chromosome |
| Accession | NZ_CP079747 | ||
| Organism | Escherichia coli strain DL21 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1903518..1903621 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1903388..1903659 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KXJ73_RS09025 | 1899944..1900606 | - | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
| KXJ73_RS09030 | 1900630..1901286 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KXJ73_RS09035 | 1901388..1901618 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KXJ73_RS09040 | 1901757..1902131 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KXJ73_RS09045 | 1902135..1903007 | + | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| KXJ73_RS09050 | 1903020..1903361 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1903388..1903659 | - | 272 | - | - | Antitoxin |
| - | 1903518..1903621 | + | 104 | - | - | Toxin |
| KXJ73_RS09055 | 1903756..1904412 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| KXJ73_RS09060 | 1904413..1904604 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KXJ73_RS09065 | 1904709..1904945 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KXJ73_RS09070 | 1905063..1906502 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T209876 NZ_CP079747:1903518-1903621 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT209876 NZ_CP079747:c1903659-1903388 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
