Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1957669..1957940 | Replicon | chromosome |
| Accession | NZ_CP079735 | ||
| Organism | Escherichia coli strain GB2005 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1957799..1957902 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1957669..1957940 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KYX12_RS09380 | 1954224..1954886 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KYX12_RS09385 | 1954910..1955566 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KYX12_RS09390 | 1955668..1955898 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KYX12_RS09395 | 1956037..1956411 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KYX12_RS09400 | 1956415..1957287 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| KYX12_RS09405 | 1957300..1957641 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1957669..1957940 | - | 272 | - | - | Antitoxin |
| - | 1957799..1957902 | + | 104 | - | - | Toxin |
| KYX12_RS09410 | 1958037..1958693 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| KYX12_RS09415 | 1958694..1958885 | - | 192 | WP_000457842.1 | YebW family protein | - |
| KYX12_RS09420 | 1958990..1959226 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KYX12_RS09425 | 1959344..1960783 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T209819 NZ_CP079735:1957799-1957902 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT209819 NZ_CP079735:c1957940-1957669 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
