Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 663187..663337 | Replicon | chromosome |
| Accession | NZ_CP079713 | ||
| Organism | Salmonella enterica subsp. arizonae strain LHICA_AZ23 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 663225..663328 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 663187..663337 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KX325_RS03195 | 659613..660308 | - | 696 | WP_000944289.1 | exodeoxyribonuclease X | - |
| KX325_RS03200 | 660332..660988 | - | 657 | WP_000100262.1 | carbon-nitrogen hydrolase family protein | - |
| KX325_RS03205 | 661096..661326 | - | 231 | WP_000856220.1 | DNA polymerase III subunit theta | - |
| KX325_RS03210 | 661464..661838 | + | 375 | WP_079835925.1 | CopC domain-containing protein YobA | - |
| KX325_RS03215 | 661839..662714 | + | 876 | WP_000604069.1 | copper homeostasis membrane protein CopD | - |
| KX325_RS03220 | 662731..663081 | + | 351 | WP_079835924.1 | YebY family protein | - |
| - | 663187..663337 | - | 151 | - | - | Antitoxin |
| - | 663225..663328 | + | 104 | - | - | Toxin |
| KX325_RS03225 | 663423..663807 | - | 385 | Protein_630 | integrase | - |
| KX325_RS03230 | 664473..666830 | + | 2358 | WP_219120944.1 | type III secretion system effector E3 ubiquitin transferase SspH2 | - |
| KX325_RS03235 | 667268..667372 | - | 105 | Protein_632 | DinI family protein | - |
| KX325_RS21015 | 667631..667762 | + | 132 | WP_256861876.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T209743 NZ_CP079713:663225-663328 [Salmonella enterica subsp. arizonae]
GGCAAGGCGACGTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACGTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT209743 NZ_CP079713:c663337-663187 [Salmonella enterica subsp. arizonae]
TTTAAAATAAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAA
AGTTGGCATTAATGCAGGCTACGTCGCCTTGCCCTTTAAGAATAGATGACAACGCCAGGTTTTCCAGCTTG
TTTAAAATAAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAA
AGTTGGCATTAATGCAGGCTACGTCGCCTTGCCCTTTAAGAATAGATGACAACGCCAGGTTTTCCAGCTTG
