Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 1714058..1714592 | Replicon | chromosome |
| Accession | NC_004757 | ||
| Organism | Nitrosomonas europaea ATCC 19718 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | Q82UB0 |
| Locus tag | ALW85_RS08255 | Protein ID | WP_011112148.1 |
| Coordinates | 1714296..1714592 (+) | Length | 99 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | Q82UB1 |
| Locus tag | ALW85_RS08250 | Protein ID | WP_011112147.1 |
| Coordinates | 1714058..1714306 (+) | Length | 83 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ALW85_RS08215 (NE1575) | 1709961..1710614 | + | 654 | WP_143023769.1 | PEP-CTERM sorting domain-containing protein | - |
| ALW85_RS08220 (NE1577) | 1711067..1711363 | - | 297 | WP_011112141.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| ALW85_RS08225 (NE1578) | 1711360..1711629 | - | 270 | WP_041356785.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| ALW85_RS14010 | 1711795..1711936 | + | 142 | Protein_1591 | IS3 family transposase | - |
| ALW85_RS08230 (NE1579) | 1712013..1712351 | - | 339 | WP_011112143.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| ALW85_RS08235 (NE1580) | 1712336..1712578 | - | 243 | WP_011112144.1 | ribbon-helix-helix domain-containing protein | - |
| ALW85_RS08240 (NE1581) | 1712785..1713213 | - | 429 | WP_011112145.1 | type II toxin-antitoxin system VapC family toxin | - |
| ALW85_RS08245 (NE1582) | 1713210..1713464 | - | 255 | WP_011112146.1 | plasmid stabilization protein | - |
| ALW85_RS08250 (NE1583) | 1714058..1714306 | + | 249 | WP_011112147.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| ALW85_RS08255 (NE1584) | 1714296..1714592 | + | 297 | WP_011112148.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| ALW85_RS08270 (NE1587) | 1715875..1716246 | - | 372 | WP_011112151.1 | transcriptional regulator | - |
| ALW85_RS08275 (NE1588) | 1716263..1716565 | - | 303 | WP_011112152.1 | type II toxin-antitoxin system HigB family toxin | - |
| ALW85_RS08280 (RK28_RS08275) | 1716937..1717189 | - | 253 | Protein_1601 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| ALW85_RS08285 (RK28_RS08280) | 1717561..1717782 | - | 222 | WP_041356787.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| ALW85_RS08290 (NE1589) | 1717946..1718353 | - | 408 | WP_011112153.1 | type II toxin-antitoxin system VapC family toxin | - |
| ALW85_RS08295 (NE1590) | 1718350..1718595 | - | 246 | WP_041356788.1 | Arc family DNA-binding protein | - |
| ALW85_RS08300 (RK28_RS08295) | 1718691..1718870 | - | 180 | WP_041356789.1 | hypothetical protein | - |
| ALW85_RS08305 (NE1591) | 1719177..1719473 | - | 297 | WP_011112155.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11493.42 Da Isoelectric Point: 10.4359
>T20969 WP_011112148.1 NC_004757:1714296-1714592 [Nitrosomonas europaea ATCC 19718]
MTYKLEFKKSALKEWEKLGHTIKEQFKKKLKERLENPHVHSAALPGAKNIYKIKLRQPGYRLVYSVEDQTITVTVIAIGK
RDRNEIYDIALSRLHDKS
MTYKLEFKKSALKEWEKLGHTIKEQFKKKLKERLENPHVHSAALPGAKNIYKIKLRQPGYRLVYSVEDQTITVTVIAIGK
RDRNEIYDIALSRLHDKS
Download Length: 297 bp
>T20969 NC_004757:1714296-1714592 [Nitrosomonas europaea ATCC 19718]
ATGACCTATAAACTGGAATTCAAAAAATCTGCACTCAAAGAATGGGAAAAACTCGGCCATACCATCAAAGAGCAATTCAA
GAAAAAACTCAAAGAACGACTGGAAAATCCTCATGTACATTCAGCAGCTTTGCCTGGGGCCAAAAACATATACAAAATCA
AATTGCGCCAACCTGGATACCGCCTCGTATACTCCGTTGAAGATCAAACTATTACGGTAACTGTCATCGCTATCGGCAAA
CGCGACCGCAATGAAATTTACGATATAGCTTTATCACGATTGCATGACAAATCCTAA
ATGACCTATAAACTGGAATTCAAAAAATCTGCACTCAAAGAATGGGAAAAACTCGGCCATACCATCAAAGAGCAATTCAA
GAAAAAACTCAAAGAACGACTGGAAAATCCTCATGTACATTCAGCAGCTTTGCCTGGGGCCAAAAACATATACAAAATCA
AATTGCGCCAACCTGGATACCGCCTCGTATACTCCGTTGAAGATCAAACTATTACGGTAACTGTCATCGCTATCGGCAAA
CGCGACCGCAATGAAATTTACGATATAGCTTTATCACGATTGCATGACAAATCCTAA
Antitoxin
Download Length: 83 a.a. Molecular weight: 8972.58 Da Isoelectric Point: 4.4000
>AT20969 WP_011112147.1 NC_004757:1714058-1714306 [Nitrosomonas europaea ATCC 19718]
MPNKILTEIAASISELKANPMKVVASGKGMPIAVLNHNEPAFYCVPAAAYEAMMELLDDIELLKIVKERMDEPSVKVSLD
DL
MPNKILTEIAASISELKANPMKVVASGKGMPIAVLNHNEPAFYCVPAAAYEAMMELLDDIELLKIVKERMDEPSVKVSLD
DL
Download Length: 249 bp
>AT20969 NC_004757:1714058-1714306 [Nitrosomonas europaea ATCC 19718]
ATGCCAAATAAAATACTTACTGAAATTGCAGCCAGCATATCCGAGCTCAAAGCCAACCCGATGAAGGTAGTAGCCAGCGG
TAAAGGCATGCCAATCGCCGTGCTAAACCACAACGAACCCGCCTTTTATTGCGTACCCGCCGCCGCCTATGAAGCAATGA
TGGAATTGCTCGATGATATCGAGCTGCTAAAAATCGTGAAAGAACGAATGGACGAACCCAGCGTCAAGGTCTCGCTCGAT
GACCTATAA
ATGCCAAATAAAATACTTACTGAAATTGCAGCCAGCATATCCGAGCTCAAAGCCAACCCGATGAAGGTAGTAGCCAGCGG
TAAAGGCATGCCAATCGCCGTGCTAAACCACAACGAACCCGCCTTTTATTGCGTACCCGCCGCCGCCTATGAAGCAATGA
TGGAATTGCTCGATGATATCGAGCTGCTAAAAATCGTGAAAGAACGAATGGACGAACCCAGCGTCAAGGTCTCGCTCGAT
GACCTATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|