Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/PIN-MazE |
| Location | 1496762..1497386 | Replicon | chromosome |
| Accession | NC_004757 | ||
| Organism | Nitrosomonas europaea ATCC 19718 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | Q82UU9 |
| Locus tag | ALW85_RS07185 | Protein ID | WP_011111947.1 |
| Coordinates | 1496762..1497166 (-) | Length | 135 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | Q82UU8 |
| Locus tag | ALW85_RS07190 | Protein ID | WP_011111948.1 |
| Coordinates | 1497153..1497386 (-) | Length | 78 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ALW85_RS07170 (NE1370) | 1492130..1495783 | - | 3654 | WP_011111944.1 | CDP-glycerol glycerophosphotransferase family protein | - |
| ALW85_RS07175 (NE1371) | 1496148..1496469 | + | 322 | Protein_1384 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| ALW85_RS07180 (NE1372) | 1496453..1496731 | + | 279 | WP_011111946.1 | helix-turn-helix domain-containing protein | - |
| ALW85_RS07185 (NE1373) | 1496762..1497166 | - | 405 | WP_011111947.1 | PIN domain-containing protein | Toxin |
| ALW85_RS07190 (NE1374) | 1497153..1497386 | - | 234 | WP_011111948.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin |
| ALW85_RS07195 (NE1375) | 1497622..1497948 | + | 327 | WP_011111949.1 | helix-turn-helix domain-containing protein | - |
| ALW85_RS07200 (RK28_RS07195) | 1498109..1498351 | + | 243 | WP_041357175.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| ALW85_RS07205 (RK28_RS07200) | 1498397..1498585 | + | 189 | WP_143023784.1 | hypothetical protein | - |
| ALW85_RS07210 (NE1377) | 1498593..1499024 | + | 432 | WP_011111951.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| ALW85_RS07215 (NE1378) | 1499301..1500344 | - | 1044 | WP_011110833.1 | IS481 family transposase | - |
| ALW85_RS07220 (NE1379) | 1500454..1500918 | - | 465 | WP_041356758.1 | hypothetical protein | - |
| ALW85_RS07225 (NE1380) | 1500944..1501282 | - | 339 | WP_011111953.1 | STAS-like domain-containing protein | - |
| ALW85_RS07230 (NE1381) | 1501279..1502232 | - | 954 | WP_011111954.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1475610..1500344 | 24734 | |
| - | flank | IS/Tn | - | - | 1499301..1500344 | 1043 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 135 a.a. Molecular weight: 14982.12 Da Isoelectric Point: 4.4315
>T20967 WP_011111947.1 NC_004757:c1497166-1496762 [Nitrosomonas europaea ATCC 19718]
MKDHSAFLDTNILLYLLSEDETKSVRAENTIAAGGFISVQVLNEFASVARRKLNMSFAEIQEFLSHIRMICSVVPVTVEV
HDQGLRIAEHYGFSIYDALIIAAALSADCTILYSEDMQNSQIIDDRLLIQNPFA
MKDHSAFLDTNILLYLLSEDETKSVRAENTIAAGGFISVQVLNEFASVARRKLNMSFAEIQEFLSHIRMICSVVPVTVEV
HDQGLRIAEHYGFSIYDALIIAAALSADCTILYSEDMQNSQIIDDRLLIQNPFA
Download Length: 405 bp
>T20967 NC_004757:c1497166-1496762 [Nitrosomonas europaea ATCC 19718]
ATGAAAGATCATAGTGCTTTTCTGGATACGAATATCCTGCTGTATCTTTTATCCGAAGATGAAACAAAATCTGTTCGGGC
GGAAAACACTATTGCAGCTGGCGGCTTTATCAGTGTTCAGGTGCTCAATGAATTCGCAAGTGTGGCCCGGAGGAAACTGA
ACATGTCCTTTGCTGAAATCCAGGAATTTCTTTCACACATACGCATGATATGTTCCGTAGTGCCGGTTACTGTCGAAGTA
CATGATCAAGGGCTCCGGATAGCGGAACACTATGGATTTTCGATATATGATGCATTGATCATCGCCGCAGCATTATCGGC
TGATTGCACGATCCTTTATTCAGAAGATATGCAGAACAGCCAAATAATTGATGATCGGCTTCTAATTCAAAATCCCTTTG
CTTGA
ATGAAAGATCATAGTGCTTTTCTGGATACGAATATCCTGCTGTATCTTTTATCCGAAGATGAAACAAAATCTGTTCGGGC
GGAAAACACTATTGCAGCTGGCGGCTTTATCAGTGTTCAGGTGCTCAATGAATTCGCAAGTGTGGCCCGGAGGAAACTGA
ACATGTCCTTTGCTGAAATCCAGGAATTTCTTTCACACATACGCATGATATGTTCCGTAGTGCCGGTTACTGTCGAAGTA
CATGATCAAGGGCTCCGGATAGCGGAACACTATGGATTTTCGATATATGATGCATTGATCATCGCCGCAGCATTATCGGC
TGATTGCACGATCCTTTATTCAGAAGATATGCAGAACAGCCAAATAATTGATGATCGGCTTCTAATTCAAAATCCCTTTG
CTTGA
Antitoxin
Download Length: 78 a.a. Molecular weight: 8915.30 Da Isoelectric Point: 8.6580
>AT20967 WP_011111948.1 NC_004757:c1497386-1497153 [Nitrosomonas europaea ATCC 19718]
MQVSKWGNSLAVRLPASVVEILDLKEGDSIEIHVAGARDIEIMKTPEAREILERLRKYRGRLPKDFKFDRLEAHERS
MQVSKWGNSLAVRLPASVVEILDLKEGDSIEIHVAGARDIEIMKTPEAREILERLRKYRGRLPKDFKFDRLEAHERS
Download Length: 234 bp
>AT20967 NC_004757:c1497386-1497153 [Nitrosomonas europaea ATCC 19718]
ATGCAGGTTTCAAAATGGGGCAACAGTCTGGCAGTCAGATTACCCGCATCAGTTGTTGAAATACTTGATCTCAAGGAAGG
TGATTCTATTGAAATTCACGTGGCAGGTGCCCGTGACATTGAAATCATGAAAACACCGGAAGCCCGTGAAATCCTTGAAC
GACTGAGAAAATACCGTGGGCGATTACCGAAAGACTTCAAATTTGATCGCCTTGAAGCGCATGAAAGATCATAG
ATGCAGGTTTCAAAATGGGGCAACAGTCTGGCAGTCAGATTACCCGCATCAGTTGTTGAAATACTTGATCTCAAGGAAGG
TGATTCTATTGAAATTCACGTGGCAGGTGCCCGTGACATTGAAATCATGAAAACACCGGAAGCCCGTGAAATCCTTGAAC
GACTGAGAAAATACCGTGGGCGATTACCGAAAGACTTCAAATTTGATCGCCTTGAAGCGCATGAAAGATCATAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|