Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2048468..2048613 | Replicon | chromosome |
| Accession | NZ_CP079655 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain WRC27_S471MPC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2048504..2048606 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2048468..2048613 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KW560_RS10035 | 2043598..2045658 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| KW560_RS10040 | 2045662..2046321 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KW560_RS10045 | 2046400..2046630 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KW560_RS10050 | 2046743..2047117 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KW560_RS10055 | 2047121..2047990 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| KW560_RS10060 | 2048007..2048345 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2048468..2048613 | - | 146 | - | - | Antitoxin |
| - | 2048504..2048606 | + | 103 | - | - | Toxin |
| KW560_RS10065 | 2048982..2049125 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KW560_RS10070 | 2049230..2050198 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KW560_RS10075 | 2050355..2051008 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| KW560_RS10080 | 2051005..2051196 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KW560_RS10085 | 2051294..2051533 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KW560_RS10090 | 2051649..2053082 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1977736..2066010 | 88274 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T209641 NZ_CP079655:2048504-2048606 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT209641 NZ_CP079655:c2048613-2048468 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
