Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5071167..5071312 | Replicon | chromosome |
| Accession | NZ_CP079606 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain WRC15_AI1547PC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5071203..5071305 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5071167..5071312 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KW550_RS24580 | 5066297..5068357 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| KW550_RS24585 | 5068361..5069020 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KW550_RS24590 | 5069099..5069329 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KW550_RS24595 | 5069442..5069816 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KW550_RS24600 | 5069820..5070689 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| KW550_RS24605 | 5070706..5071044 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 5071167..5071312 | - | 146 | - | - | Antitoxin |
| - | 5071203..5071305 | + | 103 | - | - | Toxin |
| KW550_RS24610 | 5071681..5071824 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KW550_RS24615 | 5071929..5072897 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KW550_RS24620 | 5073054..5073707 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| KW550_RS24625 | 5073704..5073895 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KW550_RS24630 | 5073993..5074232 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KW550_RS24635 | 5074348..5075781 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 5000604..5078539 | 77935 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T209498 NZ_CP079606:5071203-5071305 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT209498 NZ_CP079606:c5071312-5071167 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
