Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3445848..3445992 | Replicon | chromosome |
| Accession | NZ_CP078146 | ||
| Organism | Klebsiella variicola strain JNQH579 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3445854..3445956 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3445848..3445992 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KW408_RS16625 (KW408_16625) | 3441379..3442812 | + | 1434 | WP_064142125.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KW408_RS16630 (KW408_16630) | 3442928..3443167 | + | 240 | WP_002911393.1 | YebV family protein | - |
| KW408_RS16635 (KW408_16635) | 3443265..3443456 | + | 192 | WP_002911395.1 | YebW family protein | - |
| KW408_RS16640 (KW408_16640) | 3443453..3444097 | - | 645 | WP_211743849.1 | protein-serine/threonine phosphatase | - |
| KW408_RS16645 (KW408_16645) | 3444254..3445222 | + | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| KW408_RS16650 (KW408_16650) | 3445326..3445469 | + | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| - | 3445848..3445992 | + | 145 | - | - | Antitoxin |
| - | 3445854..3445956 | - | 103 | - | - | Toxin |
| KW408_RS16655 (KW408_16655) | 3446114..3446452 | - | 339 | WP_008804271.1 | YebY family protein | - |
| KW408_RS16660 (KW408_16660) | 3446469..3447338 | - | 870 | WP_117130699.1 | copper homeostasis membrane protein CopD | - |
| KW408_RS16665 (KW408_16665) | 3447342..3447716 | - | 375 | WP_008804269.1 | CopC domain-containing protein YobA | - |
| KW408_RS16670 (KW408_16670) | 3447829..3448059 | + | 231 | WP_211743848.1 | DNA polymerase III subunit theta | - |
| KW408_RS16675 (KW408_16675) | 3448138..3448797 | + | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| KW408_RS16680 (KW408_16680) | 3448801..3450861 | - | 2061 | WP_008804266.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T209129 NZ_CP078146:c3445956-3445854 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT209129 NZ_CP078146:3445848-3445992 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
