Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2074019..2074169 | Replicon | chromosome |
| Accession | NZ_CP078142 | ||
| Organism | Salmonella enterica subsp. diarizonae strain LHICA_D1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2074057..2074160 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2074019..2074169 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMJ85_RS10050 | 2070446..2071141 | - | 696 | WP_023246231.1 | exodeoxyribonuclease X | - |
| JMJ85_RS10055 | 2071165..2071821 | - | 657 | WP_023246230.1 | carbon-nitrogen hydrolase family protein | - |
| JMJ85_RS10060 | 2071928..2072158 | - | 231 | WP_023246229.1 | DNA polymerase III subunit theta | - |
| JMJ85_RS10065 | 2072296..2072670 | + | 375 | WP_023246228.1 | CopC domain-containing protein YobA | - |
| JMJ85_RS10070 | 2072671..2073546 | + | 876 | WP_072158693.1 | copper homeostasis membrane protein CopD | - |
| JMJ85_RS10075 | 2073563..2073913 | + | 351 | WP_053508939.1 | YebY family protein | - |
| - | 2074019..2074169 | - | 151 | - | - | Antitoxin |
| - | 2074057..2074160 | + | 104 | - | - | Toxin |
| JMJ85_RS10080 | 2074884..2075348 | + | 465 | WP_053528959.1 | helix-turn-helix transcriptional regulator | - |
| JMJ85_RS10085 | 2075589..2075692 | + | 104 | Protein_1983 | hypothetical protein | - |
| JMJ85_RS10090 | 2075808..2076257 | - | 450 | WP_023245926.1 | hypothetical protein | - |
| JMJ85_RS10095 | 2077227..2077433 | + | 207 | WP_079836821.1 | phage holin | - |
| JMJ85_RS10100 | 2077414..2077761 | + | 348 | Protein_1986 | lysozyme | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | cdtB / sopE2 | 2066685..2105357 | 38672 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T209108 NZ_CP078142:2074057-2074160 [Salmonella enterica subsp. diarizonae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT209108 NZ_CP078142:c2074169-2074019 [Salmonella enterica subsp. diarizonae]
TTTAAAAACAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAA
AGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
TTTAAAAACAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAA
AGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
