Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | pemIK/PRK09907-MazE |
| Location | 20689..21290 | Replicon | plasmid pGR1184-2 |
| Accession | NZ_CP078131 | ||
| Organism | Lactiplantibacillus plantarum subsp. plantarum strain GR1184 | ||
Toxin (Protein)
| Gene name | pemK | Uniprot ID | Q684P1 |
| Locus tag | KVG01_RS15415 | Protein ID | WP_001748110.1 |
| Coordinates | 20946..21290 (+) | Length | 115 a.a. |
Antitoxin (Protein)
| Gene name | pemI | Uniprot ID | A0A806J926 |
| Locus tag | KVG01_RS15410 | Protein ID | WP_001748109.1 |
| Coordinates | 20689..20952 (+) | Length | 88 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KVG01_RS15385 (KVG01_15385) | 15961..16464 | + | 504 | WP_046811094.1 | DUF536 domain-containing protein | - |
| KVG01_RS15390 (KVG01_15390) | 17178..17555 | + | 378 | WP_052748124.1 | YxeA family protein | - |
| KVG01_RS15400 (KVG01_15400) | 19448..19642 | - | 195 | WP_046811110.1 | hypothetical protein | - |
| KVG01_RS15405 (KVG01_15405) | 20016..20603 | - | 588 | WP_046811109.1 | site-specific integrase | - |
| KVG01_RS15410 (KVG01_15410) | 20689..20952 | + | 264 | WP_001748109.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin |
| KVG01_RS15415 (KVG01_15415) | 20946..21290 | + | 345 | WP_001748110.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin |
| KVG01_RS15420 (KVG01_15420) | 21860..22540 | - | 681 | WP_046811108.1 | ABC transporter ATP-binding protein | - |
| KVG01_RS15425 (KVG01_15425) | 22545..23597 | - | 1053 | WP_046811107.1 | ABC transporter permease | - |
| KVG01_RS15430 (KVG01_15430) | 23723..23911 | + | 189 | Protein_24 | IS3 family transposase | - |
| KVG01_RS15435 (KVG01_15435) | 24275..24553 | + | 279 | WP_003625288.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| KVG01_RS15440 (KVG01_15440) | 24543..24845 | + | 303 | WP_005917927.1 | type II toxin-antitoxin system YafQ family toxin | - |
| KVG01_RS15445 (KVG01_15445) | 24968..25378 | - | 411 | WP_046811105.1 | hypothetical protein | - |
| KVG01_RS15450 (KVG01_15450) | 25494..25901 | - | 408 | WP_046811104.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Mobilizable plasmid | - | - | 1..31995 | 31995 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 115 a.a. Molecular weight: 13041.89 Da Isoelectric Point: 6.4782
>T209067 WP_001748110.1 NZ_CP078131:20946-21290 [Lactiplantibacillus plantarum subsp. plantarum]
MVSQGDIFYVNFNPSRGHEQMNKRPAIALSNDLVCQTSNMTIVAPISSTKRNFPMYHRLTSSQTVYGKVLLDQTIALDLR
ARHVTDETIVDHVSREELEEIITLYKLLFSIDDK
MVSQGDIFYVNFNPSRGHEQMNKRPAIALSNDLVCQTSNMTIVAPISSTKRNFPMYHRLTSSQTVYGKVLLDQTIALDLR
ARHVTDETIVDHVSREELEEIITLYKLLFSIDDK
Download Length: 345 bp
>T209067 NZ_CP103822:2266161-2266532 [Actinobacillus equuli subsp. haemolyticus]
ATGTATGAAATAGTCTTTTATCGAGACCGACGTGGGCGAGAACCCGTCAAGGAATTCCTGCAGGAATTTATTAATGAACA
ACAAGACGAAAATCGAGAGCGTTTGCACAAAATTAGTCATCATTTGACGATTTTACATTTGCACGGCACTCGAGCAGGCG
AAAGCTATATTAAGCATTTAGAAGATCGTATTTGGCAGTTACGTCCAATTAGCGATTGTTTGCTCTTCGCCGGTATTGTG
CGAGGTCAGTTTGTATTGTTGCATCATTTCGCCAAAAGCAGTAGTCGGCTTCCTAAGCGTGAGCTTGAGCGAGCAAAAAG
TCGTTTGGCAGATCTACAGGAGAGGATAAAAGATGAGCCCCATTGGTTCTAG
ATGTATGAAATAGTCTTTTATCGAGACCGACGTGGGCGAGAACCCGTCAAGGAATTCCTGCAGGAATTTATTAATGAACA
ACAAGACGAAAATCGAGAGCGTTTGCACAAAATTAGTCATCATTTGACGATTTTACATTTGCACGGCACTCGAGCAGGCG
AAAGCTATATTAAGCATTTAGAAGATCGTATTTGGCAGTTACGTCCAATTAGCGATTGTTTGCTCTTCGCCGGTATTGTG
CGAGGTCAGTTTGTATTGTTGCATCATTTCGCCAAAAGCAGTAGTCGGCTTCCTAAGCGTGAGCTTGAGCGAGCAAAAAG
TCGTTTGGCAGATCTACAGGAGAGGATAAAAGATGAGCCCCATTGGTTCTAG
Antitoxin
Download Length: 88 a.a. Molecular weight: 10141.47 Da Isoelectric Point: 5.7117
>AT209067 WP_001748109.1 NZ_CP078131:20689-20952 [Lactiplantibacillus plantarum subsp. plantarum]
MELIKEQTRLAKWGNSKAARIPSQIIKQLKLDDNQDMTITIENGSIVLTPIKKNPTNIHELFKDWQDDGKRDHELDWGKS
EGNELQW
MELIKEQTRLAKWGNSKAARIPSQIIKQLKLDDNQDMTITIENGSIVLTPIKKNPTNIHELFKDWQDDGKRDHELDWGKS
EGNELQW
Download Length: 264 bp
>AT209067 NZ_CP103822:2266513-2266803 [Actinobacillus equuli subsp. haemolyticus]
ATGAGCCCCATTGGTTCTAGTTGGACATCATTTGAACGAGAGGTGTTTAATGAGTTGGAAATGGAAGAAAACCATTTCCG
CGTTAAATTAATTCTTGAAATCATTGAAACCCGACAAGCACTAGGCATTTCACAGCGTAAATTAGAAAAACTAAGCGGCG
TTAAACAATCTATGATTGCTCGCATTGAAAAGGGAAGTTCCAATCCTTCTCTTGGTACGTTACTGAAGTTACTGGTGCCT
TTGGGGAAAACATTACAAATTGTCTCTTTAGACGAAACTCATTCTAAATAA
ATGAGCCCCATTGGTTCTAGTTGGACATCATTTGAACGAGAGGTGTTTAATGAGTTGGAAATGGAAGAAAACCATTTCCG
CGTTAAATTAATTCTTGAAATCATTGAAACCCGACAAGCACTAGGCATTTCACAGCGTAAATTAGAAAAACTAAGCGGCG
TTAAACAATCTATGATTGCTCGCATTGAAAAGGGAAGTTCCAATCCTTCTCTTGGTACGTTACTGAAGTTACTGGTGCCT
TTGGGGAAAACATTACAAATTGTCTCTTTAGACGAAACTCATTCTAAATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0R2K1X3 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A806J926 |