Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1092650..1092793 Replicon chromosome
Accession NC_004631
Organism Salmonella enterica subsp. enterica serovar Typhi str. Ty2

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1092689..1092791 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1092650..1092793 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 1092650..1092793 - 144 - - Antitoxin
- 1092689..1092791 + 103 - - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - sopE2 1086986..1123980 36994


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T20888 NC_004631:1092689-1092791 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 144 bp

>AT20888 NC_004631:c1092793-1092650 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References