Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1841879..1842150 | Replicon | chromosome |
| Accession | NZ_CP077969 | ||
| Organism | Escherichia coli strain JM83 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1841917..1842020 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1841879..1842150 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KTJ86_RS09050 | 1839036..1840475 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KTJ86_RS09055 | 1840593..1840829 | + | 237 | WP_001295499.1 | YebV family protein | - |
| KTJ86_RS09060 | 1840934..1841125 | + | 192 | WP_000457842.1 | YebW family protein | - |
| KTJ86_RS09065 | 1841126..1841782 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1841879..1842150 | + | 272 | - | - | Antitoxin |
| - | 1841917..1842020 | - | 104 | - | - | Toxin |
| KTJ86_RS09070 | 1842178..1842519 | - | 342 | WP_000976476.1 | YebY family protein | - |
| KTJ86_RS09075 | 1842532..1843404 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| KTJ86_RS09080 | 1843408..1843782 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KTJ86_RS09085 | 1843921..1844151 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KTJ86_RS09090 | 1844253..1844909 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KTJ86_RS09095 | 1844933..1845595 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T208758 NZ_CP077969:c1842020-1841917 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT208758 NZ_CP077969:1841879-1842150 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
