Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2074743..2075011 | Replicon | chromosome |
| Accession | NC_004431 | ||
| Organism | Escherichia coli CFT073 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2074781..2074883 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2074743..2075011 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C_RS10625 | 2071900..2073339 | + | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C_RS10630 | 2073457..2073693 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C_RS10635 | 2073798..2073989 | + | 192 | WP_001317886.1 | YebW family protein | - |
| C_RS10640 | 2073990..2074646 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 2074743..2075011 | + | 269 | - | - | Antitoxin |
| - | 2074781..2074883 | - | 103 | - | - | Toxin |
| C_RS10650 | 2075041..2075382 | - | 342 | WP_000984819.1 | YebY family protein | - |
| C_RS10655 | 2075395..2076267 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| C_RS10660 | 2076271..2076645 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C_RS10665 | 2076784..2077014 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C_RS10670 | 2077117..2077773 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| C_RS10675 | 2077797..2078459 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T20821 NC_004431:c2074883-2074781 [Escherichia coli CFT073]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT20821 NC_004431:2074743-2075011 [Escherichia coli CFT073]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
