Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3250878..3251023 | Replicon | chromosome |
| Accession | NZ_CP077824 | ||
| Organism | Klebsiella pneumoniae strain FF1009 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3250885..3250987 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3250878..3251023 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KU661_RS15785 (KU661_15725) | 3246410..3247843 | + | 1434 | WP_117045278.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KU661_RS15790 (KU661_15730) | 3247959..3248198 | + | 240 | WP_002911393.1 | YebV family protein | - |
| KU661_RS15795 (KU661_15735) | 3248296..3248487 | + | 192 | WP_002911395.1 | YebW family protein | - |
| KU661_RS15800 (KU661_15740) | 3248484..3249137 | - | 654 | WP_020804905.1 | protein-serine/threonine phosphatase | - |
| KU661_RS15805 (KU661_15745) | 3249294..3250262 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KU661_RS15810 (KU661_15750) | 3250367..3250510 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3250878..3251023 | + | 146 | - | - | Antitoxin |
| - | 3250885..3250987 | - | 103 | - | - | Toxin |
| KU661_RS15815 (KU661_15755) | 3251146..3251484 | - | 339 | WP_002911404.1 | YebY family protein | - |
| KU661_RS15820 (KU661_15760) | 3251501..3252370 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| KU661_RS15825 (KU661_15765) | 3252374..3252748 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KU661_RS15830 (KU661_15770) | 3252861..3253091 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KU661_RS15835 (KU661_15775) | 3253170..3253829 | + | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| KU661_RS15840 (KU661_15780) | 3253833..3255893 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T208033 NZ_CP077824:c3250987-3250885 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT208033 NZ_CP077824:3250878-3251023 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
