Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1865839..1865979 | Replicon | chromosome |
| Accession | NZ_CP077823 | ||
| Organism | Klebsiella africana strain FF1019 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1865875..1865977 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1865839..1865979 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KU660_RS08965 | 1860970..1863030 | + | 2061 | WP_136030185.1 | oligopeptidase B | - |
| KU660_RS08970 | 1863034..1863693 | - | 660 | WP_136030187.1 | exodeoxyribonuclease X | - |
| KU660_RS08975 | 1863772..1864002 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KU660_RS08980 | 1864116..1864490 | + | 375 | WP_251355000.1 | CopC domain-containing protein YobA | - |
| KU660_RS08985 | 1864492..1865361 | + | 870 | WP_251355002.1 | copper homeostasis membrane protein CopD | - |
| KU660_RS08990 | 1865378..1865716 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1865839..1865979 | - | 141 | - | - | Antitoxin |
| - | 1865875..1865977 | + | 103 | - | - | Toxin |
| KU660_RS08995 | 1866346..1867308 | - | 963 | WP_025711084.1 | glycosyltransferase | - |
| KU660_RS09000 | 1867583..1868715 | - | 1133 | Protein_1757 | IS3 family transposase | - |
| KU660_RS09005 | 1868935..1869078 | - | 144 | WP_168435244.1 | Ecr family regulatory small membrane protein | - |
| KU660_RS09010 | 1869183..1870151 | - | 969 | WP_168435239.1 | VirK/YbjX family protein | - |
| KU660_RS09015 | 1870308..1870961 | + | 654 | WP_251355003.1 | protein-serine/threonine phosphatase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T208012 NZ_CP077823:1865875-1865977 [Klebsiella africana]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT208012 NZ_CP077823:c1865979-1865839 [Klebsiella africana]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
