Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5123800..5123945 | Replicon | chromosome |
| Accession | NZ_CP077818 | ||
| Organism | Klebsiella pneumoniae strain FF1023 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5123807..5123909 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5123800..5123945 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KU670_RS24685 (KU670_24650) | 5119332..5120765 | + | 1434 | WP_087831866.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KU670_RS24690 (KU670_24655) | 5120881..5121120 | + | 240 | WP_002911393.1 | YebV family protein | - |
| KU670_RS24695 (KU670_24660) | 5121218..5121409 | + | 192 | WP_002911395.1 | YebW family protein | - |
| KU670_RS24700 (KU670_24665) | 5121406..5122059 | - | 654 | WP_019725444.1 | protein-serine/threonine phosphatase | - |
| KU670_RS24705 (KU670_24670) | 5122216..5123184 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KU670_RS24710 (KU670_24675) | 5123289..5123432 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 5123800..5123945 | + | 146 | - | - | Antitoxin |
| - | 5123807..5123909 | - | 103 | - | - | Toxin |
| KU670_RS24715 (KU670_24680) | 5124068..5124406 | - | 339 | WP_002911404.1 | YebY family protein | - |
| KU670_RS24720 (KU670_24685) | 5124423..5125292 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| KU670_RS24725 (KU670_24690) | 5125296..5125670 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KU670_RS24730 (KU670_24695) | 5125783..5126013 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KU670_RS24735 (KU670_24700) | 5126092..5126751 | + | 660 | WP_040224088.1 | exodeoxyribonuclease X | - |
| KU670_RS24740 (KU670_24705) | 5126755..5128815 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T207982 NZ_CP077818:c5123909-5123807 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT207982 NZ_CP077818:5123800-5123945 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
