Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 702666..702806 | Replicon | chromosome |
| Accession | NZ_CP077816 | ||
| Organism | Klebsiella pneumoniae strain FF1043 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 702702..702804 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 702666..702806 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KU669_RS03135 (KU669_03145) | 697796..699856 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| KU669_RS03140 (KU669_03150) | 699860..700519 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KU669_RS03145 (KU669_03155) | 700598..700828 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KU669_RS03150 (KU669_03160) | 700941..701315 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KU669_RS03155 (KU669_03165) | 701319..702188 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| KU669_RS03160 (KU669_03170) | 702205..702543 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 702666..702806 | - | 141 | - | - | Antitoxin |
| - | 702702..702804 | + | 103 | - | - | Toxin |
| KU669_RS03165 (KU669_03175) | 702882..703967 | - | 1086 | WP_222903569.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| KU669_RS03170 (KU669_03180) | 703936..704208 | - | 273 | WP_136027677.1 | excisionase | - |
| KU669_RS03175 (KU669_03185) | 704689..705006 | - | 318 | WP_251357071.1 | hypothetical protein | - |
| KU669_RS03180 (KU669_03190) | 705031..705237 | - | 207 | WP_251357072.1 | hypothetical protein | - |
| KU669_RS03185 (KU669_03195) | 705296..705553 | - | 258 | WP_251357073.1 | DNA polymerase III subunit theta | - |
| KU669_RS03190 (KU669_03200) | 705640..705879 | - | 240 | WP_134891546.1 | hypothetical protein | - |
| KU669_RS03195 (KU669_03205) | 705872..706138 | - | 267 | WP_251357074.1 | eaa protein | - |
| KU669_RS03200 (KU669_03210) | 706223..706525 | - | 303 | WP_251357075.1 | hypothetical protein | - |
| KU669_RS03205 (KU669_03215) | 706522..706731 | - | 210 | Protein_624 | DUF551 domain-containing protein | - |
| KU669_RS03210 (KU669_03220) | 706929..707333 | - | 405 | WP_251357076.1 | hypothetical protein | - |
| KU669_RS03215 (KU669_03225) | 707330..707617 | - | 288 | WP_251357077.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 697829..779441 | 81612 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T207954 NZ_CP077816:702702-702804 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT207954 NZ_CP077816:c702806-702666 [Klebsiella pneumoniae]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
