Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 674492..674637 | Replicon | chromosome |
| Accession | NZ_CP077812 | ||
| Organism | Klebsiella pneumoniae strain FF1083 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 674528..674630 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 674492..674637 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KU672_RS03160 | 669622..671682 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| KU672_RS03165 | 671686..672345 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KU672_RS03170 | 672424..672654 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KU672_RS03175 | 672767..673141 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KU672_RS03180 | 673145..674014 | + | 870 | WP_064148102.1 | copper homeostasis membrane protein CopD | - |
| KU672_RS03185 | 674031..674369 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 674492..674637 | - | 146 | - | - | Antitoxin |
| - | 674528..674630 | + | 103 | - | - | Toxin |
| KU672_RS03190 | 675006..675149 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KU672_RS03195 | 675254..676222 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| KU672_RS03200 | 676379..677032 | + | 654 | WP_004175436.1 | protein-serine/threonine phosphatase | - |
| KU672_RS03205 | 677029..677220 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KU672_RS03210 | 677318..677557 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KU672_RS03215 | 677673..679106 | - | 1434 | WP_021440382.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T207912 NZ_CP077812:674528-674630 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT207912 NZ_CP077812:c674637-674492 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
