Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 636201..636346 | Replicon | chromosome |
| Accession | NZ_CP077806 | ||
| Organism | Klebsiella pneumoniae strain FF979 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 636237..636339 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 636201..636346 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KU665_RS02895 (KU665_02900) | 631331..633391 | + | 2061 | WP_251336020.1 | oligopeptidase B | - |
| KU665_RS02900 (KU665_02905) | 633395..634054 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KU665_RS02905 (KU665_02910) | 634133..634363 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KU665_RS02910 (KU665_02915) | 634476..634850 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KU665_RS02915 (KU665_02920) | 634854..635723 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| KU665_RS02920 (KU665_02925) | 635740..636078 | + | 339 | WP_064172944.1 | YebY family protein | - |
| - | 636201..636346 | - | 146 | - | - | Antitoxin |
| - | 636237..636339 | + | 103 | - | - | Toxin |
| KU665_RS02925 (KU665_02930) | 636714..636857 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KU665_RS02930 (KU665_02935) | 636962..637930 | - | 969 | WP_073972692.1 | VirK/YbjX family protein | - |
| KU665_RS02935 (KU665_02940) | 638087..638740 | + | 654 | WP_094310679.1 | protein-serine/threonine phosphatase | - |
| KU665_RS02940 (KU665_02945) | 638737..638928 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KU665_RS02945 (KU665_02950) | 639026..639265 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KU665_RS02950 (KU665_02955) | 639381..640814 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T207854 NZ_CP077806:636237-636339 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT207854 NZ_CP077806:c636346-636201 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
