Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2668333..2668477 | Replicon | chromosome |
| Accession | NZ_CP077805 | ||
| Organism | Klebsiella variicola strain FF907 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2668369..2668471 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2668333..2668477 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KU664_RS12980 (KU664_12950) | 2663463..2665523 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| KU664_RS12985 (KU664_12955) | 2665527..2666186 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| KU664_RS12990 (KU664_12960) | 2666265..2666495 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| KU664_RS12995 (KU664_12965) | 2666609..2666983 | + | 375 | WP_038421459.1 | CopC domain-containing protein YobA | - |
| KU664_RS13000 (KU664_12970) | 2666987..2667856 | + | 870 | WP_100780970.1 | copper homeostasis membrane protein CopD | - |
| KU664_RS13005 (KU664_12975) | 2667873..2668211 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 2668333..2668477 | - | 145 | - | - | Antitoxin |
| - | 2668369..2668471 | + | 103 | - | - | Toxin |
| KU664_RS13010 (KU664_12980) | 2668856..2668999 | - | 144 | WP_046621074.1 | Ecr family regulatory small membrane protein | - |
| KU664_RS13015 (KU664_12985) | 2669103..2670071 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| KU664_RS13020 (KU664_12990) | 2670227..2670880 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| KU664_RS13025 (KU664_12995) | 2670877..2671068 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KU664_RS13030 (KU664_13000) | 2671166..2671405 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KU664_RS13035 (KU664_13005) | 2671521..2672954 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T207842 NZ_CP077805:2668369-2668471 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT207842 NZ_CP077805:c2668477-2668333 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
