Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1945086..1945231 | Replicon | chromosome |
| Accession | NZ_CP077779 | ||
| Organism | Klebsiella pneumoniae strain CDI231 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1945122..1945224 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1945086..1945231 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KUM55_RS09370 (KUM55_09375) | 1940216..1942276 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| KUM55_RS09375 (KUM55_09380) | 1942280..1942939 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KUM55_RS09380 (KUM55_09385) | 1943018..1943248 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KUM55_RS09385 (KUM55_09390) | 1943361..1943735 | + | 375 | WP_071058708.1 | CopC domain-containing protein YobA | - |
| KUM55_RS09390 (KUM55_09395) | 1943739..1944608 | + | 870 | WP_032420215.1 | copper homeostasis membrane protein CopD | - |
| KUM55_RS09395 (KUM55_09400) | 1944625..1944963 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1945086..1945231 | - | 146 | - | - | Antitoxin |
| - | 1945122..1945224 | + | 103 | - | - | Toxin |
| KUM55_RS09400 (KUM55_09405) | 1945599..1945742 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KUM55_RS09405 (KUM55_09410) | 1945847..1946815 | - | 969 | WP_073971755.1 | VirK/YbjX family protein | - |
| KUM55_RS09410 (KUM55_09415) | 1946972..1947625 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| KUM55_RS09415 (KUM55_09420) | 1947622..1947813 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KUM55_RS09420 (KUM55_09425) | 1947911..1948150 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KUM55_RS09425 (KUM55_09430) | 1948266..1949699 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T207802 NZ_CP077779:1945122-1945224 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT207802 NZ_CP077779:c1945231-1945086 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
