Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1836495..1836640 | Replicon | chromosome |
| Accession | NZ_CP077763 | ||
| Organism | Klebsiella pneumoniae strain KP63 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1836502..1836604 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1836495..1836640 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KQQ01_RS09295 | 1832027..1833460 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KQQ01_RS09300 | 1833576..1833815 | + | 240 | WP_002911393.1 | YebV family protein | - |
| KQQ01_RS09305 | 1833913..1834104 | + | 192 | WP_002911395.1 | YebW family protein | - |
| KQQ01_RS09310 | 1834101..1834754 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| KQQ01_RS09315 | 1834911..1835879 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KQQ01_RS09320 | 1835984..1836127 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1836495..1836640 | + | 146 | - | - | Antitoxin |
| - | 1836502..1836604 | - | 103 | - | - | Toxin |
| KQQ01_RS09325 | 1836763..1837101 | - | 339 | WP_002911404.1 | YebY family protein | - |
| KQQ01_RS09330 | 1837118..1837987 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| KQQ01_RS09335 | 1837991..1838365 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KQQ01_RS09340 | 1838478..1838708 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KQQ01_RS09345 | 1838787..1839446 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KQQ01_RS09350 | 1839450..1841510 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T207753 NZ_CP077763:c1836604-1836502 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT207753 NZ_CP077763:1836495-1836640 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
