Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2138823..2138968 | Replicon | chromosome |
| Accession | NZ_CP077711 | ||
| Organism | Salmonella enterica subsp. enterica strain CFSAN058606 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2138863..2138966 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2138823..2138968 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DAX63_RS10460 | 2135249..2135947 | - | 699 | WP_000944279.1 | exodeoxyribonuclease X | - |
| DAX63_RS10465 | 2135971..2136627 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| DAX63_RS10470 | 2136735..2136965 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| DAX63_RS10475 | 2137103..2137477 | + | 375 | WP_000168395.1 | CopC domain-containing protein YobA | - |
| DAX63_RS10480 | 2137478..2138353 | + | 876 | WP_077909481.1 | copper homeostasis membrane protein CopD | - |
| DAX63_RS10485 | 2138370..2138723 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2138823..2138968 | - | 146 | - | - | Antitoxin |
| - | 2138863..2138966 | + | 104 | - | - | Toxin |
| DAX63_RS10490 | 2139096..2140175 | - | 1080 | WP_000078710.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| DAX63_RS10495 | 2140156..2140428 | - | 273 | WP_031603794.1 | excisionase | - |
| DAX63_RS10500 | 2140489..2140917 | - | 429 | WP_023165615.1 | hypothetical protein | - |
| DAX63_RS10505 | 2141016..2141201 | - | 186 | WP_000280164.1 | DUF1187 family protein | - |
| DAX63_RS10510 | 2141248..2142078 | - | 831 | WP_001126028.1 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2133163..2193804 | 60641 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T207643 NZ_CP077711:2138863-2138966 [Salmonella enterica subsp. enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT207643 NZ_CP077711:c2138968-2138823 [Salmonella enterica subsp. enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
