Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2208624..2208774 | Replicon | chromosome |
| Accession | NZ_CP077710 | ||
| Organism | Salmonella enterica subsp. enterica strain CFSAN058540 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2208662..2208765 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2208624..2208774 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DAX88_RS10605 | 2205050..2205745 | - | 696 | WP_023246231.1 | exodeoxyribonuclease X | - |
| DAX88_RS10610 | 2205769..2206425 | - | 657 | WP_023246230.1 | carbon-nitrogen hydrolase family protein | - |
| DAX88_RS10615 | 2206533..2206763 | - | 231 | WP_023246229.1 | DNA polymerase III subunit theta | - |
| DAX88_RS10620 | 2206901..2207275 | + | 375 | WP_023246228.1 | CopC domain-containing protein YobA | - |
| DAX88_RS10625 | 2207276..2208151 | + | 876 | WP_077918388.1 | copper homeostasis membrane protein CopD | - |
| DAX88_RS10630 | 2208168..2208518 | + | 351 | WP_023246226.1 | YebY family protein | - |
| - | 2208624..2208774 | - | 151 | - | - | Antitoxin |
| - | 2208662..2208765 | + | 104 | - | - | Toxin |
| DAX88_RS10635 | 2208881..2208976 | - | 96 | Protein_2100 | integrase | - |
| DAX88_RS10640 | 2209489..2209953 | + | 465 | WP_023245925.1 | helix-turn-helix domain-containing protein | - |
| DAX88_RS10645 | 2210433..2210882 | - | 450 | WP_023245926.1 | hypothetical protein | - |
| DAX88_RS10650 | 2211852..2212058 | + | 207 | WP_044135989.1 | phage holin | - |
| DAX88_RS10655 | 2212039..2212389 | + | 351 | Protein_2104 | lysozyme | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | cdtB / sopE2 | 2201283..2254353 | 53070 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T207624 NZ_CP077710:2208662-2208765 [Salmonella enterica subsp. enterica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT207624 NZ_CP077710:c2208774-2208624 [Salmonella enterica subsp. enterica]
TTTAAAAACAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAA
AGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
TTTAAAAACAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAA
AGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
