Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2029766..2029909 | Replicon | chromosome |
| Accession | NZ_CP077696 | ||
| Organism | Salmonella enterica subsp. enterica strain CFSAN058598 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2029804..2029907 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2029766..2029909 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DAX72_RS09575 | 2026189..2026887 | - | 699 | WP_000944280.1 | exodeoxyribonuclease X | - |
| DAX72_RS09580 | 2026911..2027567 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| DAX72_RS09585 | 2027675..2027905 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| DAX72_RS09590 | 2028043..2028417 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| DAX72_RS09595 | 2028418..2029293 | + | 876 | WP_000979695.1 | copper homeostasis membrane protein CopD | - |
| DAX72_RS09600 | 2029310..2029663 | + | 354 | WP_017441954.1 | YebY family protein | - |
| - | 2029766..2029909 | - | 144 | - | - | Antitoxin |
| - | 2029804..2029907 | + | 104 | - | - | Toxin |
| DAX72_RS09605 | 2030083..2031117 | - | 1035 | WP_108411798.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| DAX72_RS09610 | 2031150..2032298 | - | 1149 | Protein_1903 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| DAX72_RS09615 | 2032290..2032538 | + | 249 | Protein_1904 | glycoside hydrolase family 19 protein | - |
| DAX72_RS09620 | 2032535..2033067 | + | 533 | Protein_1905 | DUF2514 domain-containing protein | - |
| DAX72_RS09625 | 2033324..2033491 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| DAX72_RS09630 | 2033794..2034285 | + | 492 | WP_000348547.1 | DUF1441 family protein | - |
| DAX72_RS09635 | 2034272..2034839 | + | 568 | Protein_1908 | phage terminase large subunit family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2024101..2062898 | 38797 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T207529 NZ_CP077696:2029804-2029907 [Salmonella enterica subsp. enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT207529 NZ_CP077696:c2029909-2029766 [Salmonella enterica subsp. enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
