Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2180517..2180662 | Replicon | chromosome |
| Accession | NZ_CP077691 | ||
| Organism | Salmonella enterica subsp. enterica strain CFSAN058620 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2180557..2180660 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2180517..2180662 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DAX98_RS10590 | 2176943..2177641 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| DAX98_RS10595 | 2177665..2178321 | - | 657 | WP_021294109.1 | carbon-nitrogen hydrolase family protein | - |
| DAX98_RS10600 | 2178429..2178659 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| DAX98_RS10605 | 2178797..2179171 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| DAX98_RS10610 | 2179172..2180047 | + | 876 | WP_000979705.1 | copper homeostasis membrane protein CopD | - |
| DAX98_RS10615 | 2180064..2180417 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2180517..2180662 | - | 146 | - | - | Antitoxin |
| - | 2180557..2180660 | + | 104 | - | - | Toxin |
| DAX98_RS10620 | 2180790..2181867 | - | 1078 | Protein_2091 | tyrosine-type recombinase/integrase | - |
| DAX98_RS10625 | 2181900..2183051 | - | 1152 | Protein_2092 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| DAX98_RS10630 | 2183040..2183231 | + | 192 | Protein_2093 | glycoside hydrolase family 19 protein | - |
| DAX98_RS10635 | 2183285..2183818 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| DAX98_RS10640 | 2184075..2184242 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| DAX98_RS10645 | 2184307..2184495 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| DAX98_RS10650 | 2184550..2184810 | + | 261 | Protein_2097 | DUF1441 family protein | - |
| DAX98_RS25615 | 2184812..2185027 | + | 216 | Protein_2098 | shikimate transporter | - |
| DAX98_RS10655 | 2185037..2185324 | + | 288 | Protein_2099 | macro domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2174855..2220364 | 45509 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T207482 NZ_CP077691:2180557-2180660 [Salmonella enterica subsp. enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT207482 NZ_CP077691:c2180662-2180517 [Salmonella enterica subsp. enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
