Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2788116..2788259 | Replicon | chromosome |
| Accession | NZ_CP077680 | ||
| Organism | Salmonella enterica subsp. enterica serovar Kentucky strain YZ20MCS16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2788118..2788221 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2788116..2788259 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KTJ81_RS13255 | 2783259..2783678 | - | 420 | WP_023205587.1 | GNAT family N-acetyltransferase | - |
| KTJ81_RS13260 | 2783807..2784007 | - | 201 | WP_023223931.1 | hypothetical protein | - |
| KTJ81_RS13265 | 2784047..2784315 | + | 269 | Protein_2587 | hypothetical protein | - |
| KTJ81_RS13270 | 2784481..2784621 | + | 141 | WP_031607419.1 | hypothetical protein | - |
| KTJ81_RS13275 | 2784767..2785295 | - | 529 | Protein_2589 | transposase | - |
| KTJ81_RS13280 | 2785315..2785407 | - | 93 | WP_230855586.1 | hypothetical protein | - |
| KTJ81_RS13285 | 2785437..2787371 | - | 1935 | WP_024147907.1 | NEL-type E3 ubiquitin ligase domain-containing protein | - |
| KTJ81_RS24350 | 2787545..2787628 | - | 84 | Protein_2592 | phage tail protein | - |
| KTJ81_RS13295 | 2787640..2787987 | + | 348 | Protein_2593 | tyrosine-type recombinase/integrase | - |
| - | 2788116..2788259 | + | 144 | - | - | Antitoxin |
| - | 2788118..2788221 | - | 104 | - | - | Toxin |
| KTJ81_RS13300 | 2788361..2788714 | - | 354 | WP_000722368.1 | YebY family protein | - |
| KTJ81_RS13305 | 2788731..2789606 | - | 876 | WP_023223935.1 | copper homeostasis membrane protein CopD | - |
| KTJ81_RS13310 | 2789607..2789981 | - | 375 | WP_023205606.1 | CopC domain-containing protein YobA | - |
| KTJ81_RS13315 | 2790119..2790349 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| KTJ81_RS13320 | 2790457..2791113 | + | 657 | WP_000100249.1 | carbon-nitrogen hydrolase family protein | - |
| KTJ81_RS13325 | 2791137..2791835 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2784767..2785105 | 338 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T207463 NZ_CP077680:c2788221-2788118 [Salmonella enterica subsp. enterica serovar Kentucky]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT207463 NZ_CP077680:2788116-2788259 [Salmonella enterica subsp. enterica serovar Kentucky]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
