Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2173478..2173646 | Replicon | chromosome |
| Accession | NZ_CP077673 | ||
| Organism | Klebsiella sp. PL-2018 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2173536..2173639 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2173478..2173646 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MKleb_RS10070 (MKleb_1954) | 2168605..2170665 | + | 2061 | WP_033836507.1 | oligopeptidase B | - |
| MKleb_RS10075 (MKleb_1955) | 2170672..2171331 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| MKleb_RS10080 (MKleb_1956) | 2171410..2171640 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| MKleb_RS10085 (MKleb_1957) | 2171776..2172150 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| MKleb_RS10090 (MKleb_1958) | 2172155..2173024 | + | 870 | WP_025106130.1 | copper homeostasis membrane protein CopD | - |
| MKleb_RS10095 (MKleb_1959) | 2173041..2173379 | + | 339 | WP_217076632.1 | YebY family protein | - |
| - | 2173478..2173646 | - | 169 | - | - | Antitoxin |
| - | 2173536..2173639 | + | 104 | - | - | Toxin |
| MKleb_RS10100 (MKleb_1960) | 2173764..2174723 | - | 960 | WP_025106131.1 | spore coat protein U domain-containing protein | - |
| MKleb_RS10105 (MKleb_1961) | 2174738..2177068 | - | 2331 | WP_025106132.1 | fimbria/pilus outer membrane usher protein | - |
| MKleb_RS10110 (MKleb_1962) | 2177071..2177835 | - | 765 | WP_025106133.1 | fimbria/pilus periplasmic chaperone | - |
| MKleb_RS10115 (MKleb_1963) | 2177854..2178372 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T207428 NZ_CP077673:2173536-2173639 [Klebsiella sp. PL-2018]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT207428 NZ_CP077673:c2173646-2173478 [Klebsiella sp. PL-2018]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
