Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4187350..4187549 | Replicon | chromosome |
| Accession | NZ_CP077661 | ||
| Organism | Enterobacter cloacae complex sp. ECL112 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4187353..4187456 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4187350..4187549 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KQQ05_RS20295 | 4183608..4185056 | + | 1449 | WP_196348671.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KQQ05_RS20300 | 4185163..4185402 | + | 240 | WP_003859885.1 | YebV family protein | - |
| KQQ05_RS20305 | 4185437..4186081 | - | 645 | WP_023324865.1 | protein-serine/threonine phosphatase | - |
| KQQ05_RS20310 | 4186249..4187229 | + | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| KQQ05_RS20315 | 4187275..4187472 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 4187350..4187549 | + | 200 | - | - | Antitoxin |
| - | 4187353..4187456 | - | 104 | - | - | Toxin |
| KQQ05_RS20320 | 4187598..4187936 | - | 339 | WP_032609509.1 | YebY family protein | - |
| KQQ05_RS20325 | 4187953..4188822 | - | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| KQQ05_RS20330 | 4188824..4189195 | - | 372 | WP_023314337.1 | CopC domain-containing protein YobA | - |
| KQQ05_RS20335 | 4189333..4189563 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| KQQ05_RS20340 | 4189675..4190325 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| KQQ05_RS20345 | 4190350..4191012 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T207345 NZ_CP077661:c4187456-4187353 [Enterobacter cloacae complex sp. ECL112]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT207345 NZ_CP077661:4187350-4187549 [Enterobacter cloacae complex sp. ECL112]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
