Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2019296..2019499 | Replicon | chromosome |
| Accession | NZ_CP077660 | ||
| Organism | Enterobacter cloacae complex sp. ECL78 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2019389..2019492 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2019296..2019499 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KQQ04_RS09435 | 2015833..2016495 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| KQQ04_RS09440 | 2016520..2017170 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| KQQ04_RS09445 | 2017282..2017512 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| KQQ04_RS09450 | 2017650..2018021 | + | 372 | WP_022651439.1 | CopC domain-containing protein YobA | - |
| KQQ04_RS09455 | 2018023..2018892 | + | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| KQQ04_RS09460 | 2018909..2019247 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 2019296..2019499 | - | 204 | - | - | Antitoxin |
| - | 2019389..2019492 | + | 104 | - | - | Toxin |
| KQQ04_RS09465 | 2019570..2020655 | - | 1086 | WP_049125640.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| KQQ04_RS09470 | 2020624..2020896 | - | 273 | WP_023300430.1 | excisionase | - |
| KQQ04_RS09475 | 2021017..2021538 | - | 522 | WP_049125635.1 | hypothetical protein | - |
| KQQ04_RS09480 | 2021595..2021810 | - | 216 | WP_059356783.1 | TraR/DksA family transcriptional regulator | - |
| KQQ04_RS09485 | 2021813..2022115 | - | 303 | WP_049126688.1 | hypothetical protein | - |
| KQQ04_RS09490 | 2022207..2022398 | - | 192 | WP_049126690.1 | DUF1382 family protein | - |
| KQQ04_RS09495 | 2022395..2022712 | - | 318 | WP_063927049.1 | hypothetical protein | - |
| KQQ04_RS09500 | 2022709..2022927 | - | 219 | WP_126517466.1 | hypothetical protein | - |
| KQQ04_RS09505 | 2022924..2023475 | - | 552 | WP_022651070.1 | phage N-6-adenine-methyltransferase | - |
| KQQ04_RS09510 | 2023472..2023624 | - | 153 | WP_022651071.1 | DUF1317 family protein | - |
| KQQ04_RS09515 | 2023621..2024049 | - | 429 | WP_022651072.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T207325 NZ_CP077660:2019389-2019492 [Enterobacter cloacae complex sp. ECL78]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT207325 NZ_CP077660:c2019499-2019296 [Enterobacter cloacae complex sp. ECL78]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
