Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2278566..2278775 | Replicon | chromosome |
| Accession | NZ_CP077659 | ||
| Organism | Enterobacter cloacae complex sp. ECL72 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2278579..2278682 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2278566..2278775 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KTH07_RS11060 | 2274834..2276282 | + | 1449 | WP_195892607.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KTH07_RS11065 | 2276389..2276628 | + | 240 | WP_003859885.1 | YebV family protein | - |
| KTH07_RS11070 | 2276663..2277307 | - | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| KTH07_RS11075 | 2277475..2278455 | + | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| KTH07_RS11080 | 2278501..2278698 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2278566..2278775 | + | 210 | - | - | Antitoxin |
| - | 2278579..2278682 | - | 104 | - | - | Toxin |
| KTH07_RS11085 | 2278824..2279162 | - | 339 | WP_003859787.1 | YebY family protein | - |
| KTH07_RS11090 | 2279179..2280048 | - | 870 | WP_063161934.1 | copper homeostasis membrane protein CopD | - |
| KTH07_RS11095 | 2280050..2280421 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| KTH07_RS11100 | 2280559..2280789 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| KTH07_RS11105 | 2280901..2281552 | + | 652 | Protein_2186 | carbon-nitrogen hydrolase family protein | - |
| KTH07_RS11110 | 2281577..2282239 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T207309 NZ_CP077659:c2278682-2278579 [Enterobacter cloacae complex sp. ECL72]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT207309 NZ_CP077659:2278566-2278775 [Enterobacter cloacae complex sp. ECL72]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
