Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4516820..4517091 | Replicon | chromosome |
| Accession | NZ_CP077649 | ||
| Organism | Escherichia coli strain ST865 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4516950..4517053 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4516820..4517091 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KTN07_RS21570 | 4513375..4514037 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KTN07_RS21575 | 4514061..4514717 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KTN07_RS21580 | 4514819..4515049 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KTN07_RS21585 | 4515188..4515562 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| KTN07_RS21590 | 4515566..4516438 | + | 873 | WP_174243376.1 | copper homeostasis membrane protein CopD | - |
| KTN07_RS21595 | 4516451..4516792 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 4516820..4517091 | - | 272 | - | - | Antitoxin |
| - | 4516950..4517053 | + | 104 | - | - | Toxin |
| KTN07_RS21600 | 4517188..4517844 | + | 657 | WP_217609337.1 | protein-serine/threonine phosphatase | - |
| KTN07_RS21605 | 4517845..4518036 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KTN07_RS21610 | 4518141..4518377 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KTN07_RS21615 | 4518495..4519934 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T207291 NZ_CP077649:4516950-4517053 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT207291 NZ_CP077649:c4517091-4516820 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
