Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4517178..4517449 | Replicon | chromosome |
| Accession | NZ_CP077646 | ||
| Organism | Escherichia coli strain ST866 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4517308..4517411 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4517178..4517449 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KTN06_RS21585 | 4513733..4514395 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KTN06_RS21590 | 4514419..4515075 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KTN06_RS21595 | 4515177..4515407 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KTN06_RS21600 | 4515546..4515920 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| KTN06_RS21605 | 4515924..4516796 | + | 873 | WP_174243376.1 | copper homeostasis membrane protein CopD | - |
| KTN06_RS21610 | 4516809..4517150 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 4517178..4517449 | - | 272 | - | - | Antitoxin |
| - | 4517308..4517411 | + | 104 | - | - | Toxin |
| KTN06_RS21615 | 4517546..4518202 | + | 657 | WP_217609337.1 | protein-serine/threonine phosphatase | - |
| KTN06_RS21620 | 4518203..4518394 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KTN06_RS21625 | 4518499..4518735 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KTN06_RS21630 | 4518853..4520292 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T207264 NZ_CP077646:4517308-4517411 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT207264 NZ_CP077646:c4517449-4517178 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
