Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1975966..1976112 | Replicon | chromosome |
| Accession | NZ_CP077429 | ||
| Organism | Klebsiella aerogenes strain NTT31XS | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1976001..1976104 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1975966..1976112 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KSL85_RS09635 (KSL85_09635) | 1971075..1973135 | + | 2061 | WP_015705949.1 | oligopeptidase B | - |
| KSL85_RS09640 (KSL85_09640) | 1973138..1973797 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| KSL85_RS09645 (KSL85_09645) | 1973877..1974107 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| KSL85_RS09650 (KSL85_09650) | 1974242..1974616 | + | 375 | WP_026612268.1 | CopC domain-containing protein YobA | - |
| KSL85_RS09655 (KSL85_09655) | 1974620..1975489 | + | 870 | WP_015705947.1 | copper homeostasis membrane protein CopD | - |
| KSL85_RS09660 (KSL85_09660) | 1975503..1975844 | + | 342 | WP_015705946.1 | YebY family protein | - |
| - | 1975966..1976112 | - | 147 | - | - | Antitoxin |
| - | 1976001..1976104 | + | 104 | - | - | Toxin |
| KSL85_RS09665 (KSL85_09665) | 1976232..1977179 | - | 948 | WP_032709999.1 | spore coat U domain-containing protein | - |
| KSL85_RS09670 (KSL85_09670) | 1977198..1979522 | - | 2325 | WP_015705944.1 | fimbria/pilus outer membrane usher protein | - |
| KSL85_RS09675 (KSL85_09675) | 1979525..1980274 | - | 750 | WP_015366013.1 | molecular chaperone | - |
| KSL85_RS09680 (KSL85_09680) | 1980292..1980810 | - | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T207233 NZ_CP077429:1976001-1976104 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT207233 NZ_CP077429:c1976112-1975966 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
