Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE-RelB |
| Location | 26408..26967 | Replicon | chromosome |
| Accession | NZ_CP077425 | ||
| Organism | Vibrio mimicus strain Y4 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | D7HHK2 |
| Locus tag | KSS82_RS00225 | Protein ID | WP_000578471.1 |
| Coordinates | 26408..26686 (-) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | Q9L991 |
| Locus tag | KSS82_RS00230 | Protein ID | WP_000381183.1 |
| Coordinates | 26683..26967 (-) | Length | 95 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KSS82_RS00185 (KSS82_00185) | 21520..21909 | + | 390 | WP_000491261.1 | VOC family protein | - |
| KSS82_RS00190 (KSS82_00190) | 22466..23071 | + | 606 | WP_217009287.1 | DUF922 domain-containing protein | - |
| KSS82_RS00195 (KSS82_00195) | 23212..23589 | + | 378 | WP_000029900.1 | polymorphic toxin type 44 domain-containing protein | - |
| KSS82_RS00200 (KSS82_00200) | 23567..23971 | + | 405 | WP_142577318.1 | hypothetical protein | - |
| KSS82_RS00205 (KSS82_00205) | 24109..24495 | + | 387 | WP_199356045.1 | VOC family protein | - |
| KSS82_RS20440 | 24552..24665 | + | 114 | WP_238687882.1 | iron transporter | - |
| KSS82_RS00210 (KSS82_00210) | 24631..25113 | + | 483 | WP_000422937.1 | GNAT family protein | - |
| KSS82_RS00215 (KSS82_00215) | 25283..25654 | + | 372 | WP_001008379.1 | hypothetical protein | - |
| KSS82_RS00220 (KSS82_00220) | 25814..26269 | + | 456 | WP_055033988.1 | hypothetical protein | - |
| KSS82_RS00225 (KSS82_00225) | 26408..26686 | - | 279 | WP_000578471.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin |
| KSS82_RS00230 (KSS82_00230) | 26683..26967 | - | 285 | WP_000381183.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| KSS82_RS20445 | 27083..27276 | + | 194 | Protein_52 | hypothetical protein | - |
| KSS82_RS00235 (KSS82_00235) | 27312..27530 | + | 219 | WP_217009288.1 | DUF3709 domain-containing protein | - |
| KSS82_RS00240 (KSS82_00240) | 27779..28096 | - | 318 | WP_000077449.1 | CcdB family protein | - |
| KSS82_RS00245 (KSS82_00245) | 28096..28341 | - | 246 | WP_001260797.1 | type II toxin-antitoxin system CcdA family antitoxin | - |
| KSS82_RS00250 (KSS82_00250) | 28644..29603 | + | 960 | WP_230374814.1 | hypothetical protein | - |
| KSS82_RS00255 (KSS82_00255) | 29587..30015 | + | 429 | WP_000074666.1 | hypothetical protein | - |
| KSS82_RS00260 (KSS82_00260) | 30178..30954 | + | 777 | WP_217009289.1 | phosphotransferase | - |
| KSS82_RS00265 (KSS82_00265) | 31147..31416 | + | 270 | WP_217009290.1 | DUF4160 domain-containing protein | - |
| KSS82_RS00270 (KSS82_00270) | 31410..31931 | + | 522 | WP_000921693.1 | DUF2442 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integron | - | cqsA / hlyA / vgrG-3 / vasL / icmF/vasK / vasJ / vasI / vasH / clpB/vasG / vasF / vasE / vasD / vasC / vasB / vasA / VCA0109 / vipB/mglB / vipA/mglA / vgrG-2 / hcp-2 / hlyA | 1..1082609 | 1082608 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10838.56 Da Isoelectric Point: 4.6794
>T207221 WP_000578471.1 NZ_CP077425:c26686-26408 [Vibrio mimicus]
MIFWEEASLNDREKIFEFLYDFNPAAAEKTDELIEAKVENLLEQPLMGVQRDGIRGRLLIIPEISMIVSYWVDGSKIRIM
RVLHQKQKFPND
MIFWEEASLNDREKIFEFLYDFNPAAAEKTDELIEAKVENLLEQPLMGVQRDGIRGRLLIIPEISMIVSYWVDGSKIRIM
RVLHQKQKFPND
Download Length: 279 bp
>T207221 NZ_CP102944:c251412-251131 [Pseudomonas aeruginosa]
ATGAGCCTGAAGTGGACCCGCAAGGCGGCCGCCGACCTGGACGCCATCTACGACCATTACGTCGTGCTGATCGGCCCGGA
AAAAGCCCTGAAAGCCGTCCAGGACATCGTCGAGCAGGTGAAACCGCTGCAGCAGGTGGCCAACCAGGGGGCAGGGCGGC
CCAGCGAGGTGCCAGGCGTACGCACCCTGAACCTGGAGCGCTGGCCGTTCAGCGCCCCGTTTCGGGTAAAAGGCAAGGAA
ATCCAGATTTTGCGCATCGACAGGGTCGAAATTACCCCCTAA
ATGAGCCTGAAGTGGACCCGCAAGGCGGCCGCCGACCTGGACGCCATCTACGACCATTACGTCGTGCTGATCGGCCCGGA
AAAAGCCCTGAAAGCCGTCCAGGACATCGTCGAGCAGGTGAAACCGCTGCAGCAGGTGGCCAACCAGGGGGCAGGGCGGC
CCAGCGAGGTGCCAGGCGTACGCACCCTGAACCTGGAGCGCTGGCCGTTCAGCGCCCCGTTTCGGGTAAAAGGCAAGGAA
ATCCAGATTTTGCGCATCGACAGGGTCGAAATTACCCCCTAA
Antitoxin
Download Length: 95 a.a. Molecular weight: 10901.25 Da Isoelectric Point: 8.0775
>AT207221 WP_000381183.1 NZ_CP077425:c26967-26683 [Vibrio mimicus]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKALSHDAWLTEQVNQAFEKFDSGKAVFIEHDIAKAR
MAERKAKIRNRGHA
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKALSHDAWLTEQVNQAFEKFDSGKAVFIEHDIAKAR
MAERKAKIRNRGHA
Download Length: 285 bp
>AT207221 NZ_CP102944:c251636-251409 [Pseudomonas aeruginosa]
ATGAGCACCGTAGTCTCGTTCCGCGCCGATGACGCCCTGGTCGCGGCCCTCGACGAACTGGCCCGCGCCACCCACCGCGA
CCGCCCGTATCACCTGCGGCAGGCGCTCGCGCAGTACCTGGAAAGGCAGCAGTGGCAGGTCGCTGCCATCGATGAAGGCT
TGGCCGATGCCAATGCCGGTCGCCTGCTGGAACACACCGAGATCGAGAAGCGCTGGGGGCTGCAATGA
ATGAGCACCGTAGTCTCGTTCCGCGCCGATGACGCCCTGGTCGCGGCCCTCGACGAACTGGCCCGCGCCACCCACCGCGA
CCGCCCGTATCACCTGCGGCAGGCGCTCGCGCAGTACCTGGAAAGGCAGCAGTGGCAGGTCGCTGCCATCGATGAAGGCT
TGGCCGATGCCAATGCCGGTCGCCTGCTGGAACACACCGAGATCGAGAAGCGCTGGGGGCTGCAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A271VKS2 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A067BL33 |