Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2332729..2332811 | Replicon | chromosome |
| Accession | NZ_CP077422 | ||
| Organism | Dickeya dadantii strain M2-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2332731..2332811 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2332729..2332811 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KTF62_RS10445 (KTF62_10395) | 2328781..2329878 | - | 1098 | WP_224062976.1 | HDOD domain-containing protein | - |
| KTF62_RS10450 (KTF62_10400) | 2329869..2330984 | - | 1116 | WP_161450466.1 | ATP-binding protein | - |
| KTF62_RS10455 (KTF62_10405) | 2330977..2332101 | - | 1125 | WP_224062977.1 | FIST N-terminal domain-containing protein | - |
| - | 2332729..2332811 | + | 83 | - | - | Antitoxin |
| - | 2332731..2332811 | - | 81 | - | - | Toxin |
| KTF62_RS10460 (KTF62_10410) | 2332981..2333319 | - | 339 | WP_077246249.1 | YebY family protein | - |
| KTF62_RS10465 (KTF62_10415) | 2333705..2334121 | + | 417 | WP_224063038.1 | hypothetical protein | - |
| KTF62_RS10470 (KTF62_10420) | 2334461..2334709 | + | 249 | WP_013317833.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| KTF62_RS10475 (KTF62_10425) | 2334820..2336562 | - | 1743 | WP_077246247.1 | ABC transporter permease subunit | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T207203 NZ_CP077422:c2332811-2332731 [Dickeya dadantii]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 83 bp
>AT207203 NZ_CP077422:2332729-2332811 [Dickeya dadantii]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
