Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1252439..1252584 | Replicon | chromosome |
| Accession | NZ_CP077407 | ||
| Organism | Enterobacter roggenkampii strain FDAARGOS 1430 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1252446..1252549 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1252439..1252584 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L60_RS06035 (I6L60_06035) | 1247654..1249102 | + | 1449 | WP_201258618.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6L60_RS06040 (I6L60_06040) | 1249209..1249448 | + | 240 | WP_008500472.1 | YebV family protein | - |
| I6L60_RS06045 (I6L60_06045) | 1249483..1250127 | - | 645 | WP_023325510.1 | protein-serine/threonine phosphatase | - |
| I6L60_RS06050 (I6L60_06050) | 1250294..1251235 | + | 942 | WP_069598482.1 | VirK/YbjX family protein | - |
| I6L60_RS06055 (I6L60_06055) | 1251542..1252033 | - | 492 | WP_069598956.1 | hypothetical protein | - |
| - | 1252439..1252584 | + | 146 | - | - | Antitoxin |
| - | 1252446..1252549 | - | 104 | - | - | Toxin |
| I6L60_RS06060 (I6L60_06060) | 1252688..1253026 | - | 339 | WP_008500468.1 | YebY family protein | - |
| I6L60_RS06065 (I6L60_06065) | 1253043..1253912 | - | 870 | WP_069598483.1 | copper homeostasis membrane protein CopD | - |
| I6L60_RS06070 (I6L60_06070) | 1253914..1254285 | - | 372 | WP_069598484.1 | CopC domain-containing protein YobA | - |
| I6L60_RS06075 (I6L60_06075) | 1254423..1254653 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| I6L60_RS06080 (I6L60_06080) | 1254764..1255414 | + | 651 | WP_069598485.1 | carbon-nitrogen hydrolase family protein | - |
| I6L60_RS06085 (I6L60_06085) | 1255439..1256101 | + | 663 | WP_069598486.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T207148 NZ_CP077407:c1252549-1252446 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT207148 NZ_CP077407:1252439-1252584 [Enterobacter roggenkampii]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
